| # | Name | Elevation | Prominence | Isolation | Counties | Quadrangle |
| 1 | Bear Mountain | 7,168' | 457' | 3.74 | Pennington | Berne |
| 2 | White Tail Peak | 6,971' | 373' | 4.76 | Pennington | Deerfield |
| 3 | 6959 | 6,959' | 308' | 2.03 | Pennington | Deerfield |
| 4 | 6950 | 6,950' | 316' | 0.52 | Pennington | Custer |
| 5 | Medicine Mountain | 6,878' | 338' | 2.21 | Pennington | Medicine Mountain |
| 6 | 6850 | 6,850' | 348' | 3.14 | Pennington | Deerfield |
| 7 | 6830 | 6,830' | 320' | 4.39 | Lawrence | Nahant |
| 8 | Custer Peak | 6,804' | 654' | 7.24 | Lawrence | Minnesota Ridge |
| 9 | Hat Mountain | 6,779' | 369' | 4.07 | Pennington | Ditch Creek |
| 10 | 6750 | 6,750' | 320' | 3.57 | Custer | Signal Hill |
| 11 | 6740 | 6,740' | 400' | 2.15 | Pennington | Medicine Mountain |
| 12 | 6735 | 6,735' | 355' | 1.39 | Custer | Custer |
| 13 | 6733 | 6,733' | 313' | 1.18 | Custer | Custer |
| 14 | Cement Ridge | 6,674' | 574' | 11.25 | Crook | Old Baldy Mountain |
| 15 | 6620 | 6,620' | 320' | 2.94 | Pennington | Medicine Mountain |
| 16 | Zimmer Ridge | 6,620' | 685' | 3.97 | Pennington | Medicine Mountain |
| 17 | 6500 | 6,500' | 350' | 2.69 | Lawrence | Lead |
| 18 | Saint Elmo Peak | 6,458' | 758' | 2.03 | Pennington | Custer |
| 19 | Atlantic Hill | 6,393' | 373' | 3.69 | Custer | Berne |
| 20 | 6380 | 6,380' | 304' | 2.62 | Pennington | Berne |
| 21 | 6380 | 6,380' | 480' | 1.75 | Custer | Custer |
| 22 | 6361 | 6,361' | 421' | 4.14 | Custer | Berne |
| 23 | Castle Peak | 6,358' | 448' | 5.79 | Pennington | Rochford |
| 24 | 6340 | 6,340' | 400' | 1.38 | Pennington | Custer |
| 25 | Buckhorn Mountain | 6,330' | 310' | 1.39 | Custer | Custer |
| 26 | 6260 | 6,260' | 320' | 1.49 | Pennington | Rochford |
| 27 | 6260 | 6,260' | 800' | 7.30 | Custer | Cicero Peak |
| 28 | Five Points | 6,221' | 601' | 6.61 | Pennington | Hill City |
| 29 | 6220 | 6,220' | 320' | 0.99 | Pennington | Rochford |
| 30 | Ragged Top Mountain | 6,220' | 360' | 0.86 | Lawrence | Savoy |
| 31 | 6220 | 6,220' | 320' | 3.00 | Lawrence | Lead |
| 32 | 6205 | 6,205' | 355' | 3.19 | Pennington | Minnesota Ridge |
| 33 | 6181 | 6,181' | 401' | 1.73 | Custer | Berne |
| 34 | 6170 | 6,170' | 390' | 1.79 | Custer | Custer |
| 35 | 6167 | 6,167' | 507' | 3.74 | Pennington | Silver City |
| 36 | Cicero Peak | 6,166' | 503' | 1.49 | Custer | Cicero Peak |
| 37 | 6130 | 6,130' | 310' | 0.77 | Pennington | Hill City |
| 38 | Custer Mountain | 6,100' | 600' | 3.94 | Custer | Custer |
| 39 | 6070 | 6,070' | 570' | 2.05 | Pennington | Silver City |
| 40 | 6060 | 6,060' | 320' | 1.44 | Pennington | Hill City |
| 41 | 6060 | 6,060' | 400' | 0.98 | Custer | Cicero Peak |
| 42 | Lowden Mountain | 6,055' | 435' | 1.14 | Pennington | Hill City |
| 43 | 6048 | 6,048' | 428' | 1.65 | Pennington | Hill City |
| 44 | 6043 | 6,043' | 343' | 0.80 | Pennington | Silver City |
| 45 | 6020 | 6,020' | 400' | 1.57 | Pennington | Silver City |
| 46 | Duling Hill | 6,005' | 345' | 5.59 | Crook | Duling Hill |
| 47 | 5980 | 5,980' | 320' | 4.45 | Lawrence | Tinton |
| 48 | 5980 | 5,980' | 320' | 0.73 | Pennington | Hill City |
| 49 | 5948 | 5,948' | 568' | 2.00 | Custer | Cicero Peak |
| 50 | Fish Mountain | 5,942' | 312' | 2.60 | Crook | Duling Hill |
| 51 | Twin Sisters, North | 5,940' | 400' | 3.71 | Custer | Fourmile |
| 52 | Scruton Mountain | 5,922' | 342' | 1.18 | Pennington | Silver City |
| 53 | 5900 | 5,900' | 480' | 3.16 | Custer | Fourmile |
| 54 | Needles, The | 5,900' | 320' | 1.82 | Lawrence | Tinton |
| 55 | Smith Mountain | 5,897' | 357' | 1.42 | Pennington | Hill City |
| 56 | Flag Mountain | 5,896' | 316' | 1.28 | Pennington | Hill City |
| 57 | "Mount Warner" | 5,889' | 949' | 4.27 | Pennington | Mount Rushmore |
| 58 | Iron Mountain | 5,887' | 397' | 1.39 | Crook | Duling Hill |
| 59 | Little Crow Peak | 5,885' | 305' | 1.89 | Lawrence | Maurice |
| 60 | 5874 | 5,874' | 334' | 2.25 | Custer | Custer |
| 61 | 5865 | 5,865' | 325' | 2.52 | Pennington | Rochford |
| 62 | Hooker Peak | 5,862' | 432' | 0.95 | Crook | Duling Hill |
| 63 | 5860 | 5,860' | 320' | 1.22 | Custer | Fourmile |
| 64 | Samelias Peak | 5,856' | 476' | 0.62 | Pennington | Mount Rushmore |
| 65 | 5846 | 5,846' | 369' | 1.14 | Custer | Fourmile |
| 66 | 5834 | 5,834' | 334' | 1.36 | Custer | Cicero Peak |
| 67 | Spearfish Peak | 5,820' | 400' | 2.30 | Lawrence | Spearfish |
| 68 | Silver Peak | 5,810' | 430' | 2.15 | Pennington | Silver City |
| 69 | 5802 | 5,802' | 302' | 1.37 | Custer | Fourmile |
| 70 | 5800 | 5,800' | 300' | 2.04 | Pennington | Silver City |
| 71 | 5780 | 5,780' | 320' | 1.15 | Custer | Custer |
| 72 | 5780 | 5,780' | 400' | 2.06 | Pennington | Hill City |
| 73 | Crow Peak | 5,771' | 911' | 4.76 | Lawrence | Maurice |
| 74 | 5741 | 5,741' | 361' | 0.64 | Pennington | Mount Rushmore |
| 75 | Humbolt Mountain | 5,722' | 462' | 1.69 | Pennington | Hill City |
| 76 | 5707 | 5,707' | 417' | 2.64 | Pennington | Silver City |
| 77 | Bishop Mountain | 5,706' | 326' | 0.85 | Pennington | Hill City |
| 78 | Woodpecker Ridge | 5,700' | 600' | 3.83 | Custer | Iron Mountain |
| 79 | Theodore Roosevelt, Mount | 5,700' | 360' | 4.85 | Lawrence | Spearfish |
| 80 | 5696 | 5,696' | 396' | 1.36 | Pennington | Silver City |
| 81 | Crystal Mountain | 5,690' | 340' | 7.55 | Lawrence | Nemo |
| 82 | Elk Mountains (HP) | 5,669' | 839' | 15.30 | Custer | Clifton |
| 83 | Summit Peak | 5,655' | 515' | 1.23 | Pennington | Hill City |
| 84 | 5604 | 5,604' | 384' | 2.72 | Custer | Cicero Peak |
| 85 | 5581 | 5,581' | 321' | 1.05 | Pennington | Silver City |
| 86 | Tetro Rock | 5,562' | 382' | 2.58 | Lawrence | Spearfish |
| 87 | Buck Mountain | 5,553' | 343' | 2.72 | Pennington | Nemo |
| 88 | 5540 | 5,540' | 320' | 1.71 | Pennington | Hill City |
| 89 | 5510 | 5,510' | 340' | 3.26 | Lawrence | Deadman Mountain |
| 90 | Wildcat Peak | 5,510' | 420' | 4.03 | Custer | Clifton |
| 91 | 5510 | 5,510' | 400' | 3.26 | Custer | Clifton |
| 92 | 5470 | 5,470' | 360' | 1.72 | Lawrence | Deadman Mountain |
| 93 | 5452 | 5,452' | 432' | 2.34 | Lawrence | Deadwood South |
| 94 | 5450 | 5,450' | 360' | 2.70 | Lawrence | Nemo |
| 95 | 5438 | 5,438' | 548' | 2.31 | Meade | Deadman Mountain |
| 96 | 5430 | 5,430' | 320' | 1.46 | Meade | Deadman Mountain |
| 97 | 5430 | 5,430' | 340' | 6.54 | Crook | Sugarloaf Mountain |
| 98 | 5420 | 5,420' | 360' | 1.48 | Lawrence | Deadwood South |
| 99 | Polo Peak | 5,410' | 510' | 1.13 | Lawrence | Spearfish |
| 100 | Silver Mountain | 5,405' | 425' | 2.41 | Pennington | Mount Rushmore |
| 101 | Green Top | 5,390' | 420' | 3.13 | Lawrence | Nemo |
| 102 | 5380 | 5,380' | 320' | 1.54 | Lawrence | Deadwood North |
| 103 | 5380 | 5,380' | 320' | 2.90 | Custer | Fourmile |
| 104 | White Mansion | 5,350' | 360' | 0.61 | Lawrence | Nemo |
| 105 | "Veteran's Peak" | 5,333' | 343' | 1.57 | Meade | Deadman Mountain |
| 106 | Boulder Hill | 5,331' | 391' | 1.17 | Pennington | Mount Rushmore |
| 107 | Green Mountain | 5,325' | 305' | 0.76 | Lawrence | Spearfish |
| 108 | Black Hills, West | 5,323' | 373' | 5.83 | Crook | Black Hills |
| 109 | 5321 | 5,321' | 331' | 2.65 | Lawrence | Piedmont |
| 110 | 5316 | 5,316' | 466' | 3.51 | Custer | Pringle |
| 111 | 5290 | 5,290' | 300' | 2.31 | Crook | Sugarloaf Mountain |
| 112 | 5260 | 5,260' | 320' | 1.40 | Lawrence | Spearfish |
| 113 | Green Mountain | 5,250' | 480' | 1.93 | Pennington | Piedmont |
| 114 | 5250 | 5,250' | 320' | 0.91 | Custer | Pringle |
| 115 | 5220 | 5,220' | 429' | 1.48 | Pennington | Mount Rushmore |
| 116 | Perrin Mountain | 5,212' | 352' | 2.84 | Pennington | Pactola Dam |
| 117 | 5190 | 5,190' | 300' | 2.99 | Pennington | Pactola Dam |
| 118 | 5180 | 5,180' | 480' | 1.69 | Lawrence | Deadwood North |
| 119 | 5171 | 5,171' | 341' | 1.75 | Pennington | Mount Rushmore |
| 120 | 5163 | 5,163' | 313' | 2.13 | Lawrence | Nemo |
| 121 | 5136 | 5,136' | 306' | 0.73 | Pennington | Piedmont |
| 122 | 5110 | 5,110' | 400' | 1.69 | Meade | Deadman Mountain |
| 123 | 5110 | 5,110' | 300' | 1.51 | Meade | Deadman Mountain |
| 124 | Thrall Mountain | 5,091' | 301' | 2.11 | Pennington | Pactola Dam |
| 125 | 5048 | 5,048' | 348' | 0.64 | Pennington | Mount Rushmore |
| 126 | 5017 | 5,017' | 347' | 2.67 | Custer | Pringle |
| 127 | 5000 | 5,000' | 420' | 2.38 | Pennington | Mount Rushmore |
| 128 | 4990 | 4,990' | 300' | 1.25 | Lawrence | Piedmont |
| 129 | 4990 | 4,990' | 340' | 1.33 | Custer | Pringle |
| 130 | 4990 | 4,990' | 300' | 0.77 | Custer | Pringle |
| 131 | Sullivan Peak | 4,967' | 457' | 5.71 | Custer | Dewey |
| 132 | Twin Buttes | 4,949' | 399' | 1.29 | Custer | Dewey |
| 133 | Deadman Mountain | 4,943' | 333' | 1.72 | Meade | Deadman Mountain |
| 134 | Crook Mountain | 4,940' | 530' | 3.34 | Lawrence | Deadwood North |
| 135 | Table Mountain | 4,933' | 303' | 5.64 | Crook | Sugarloaf Mountain |
| 136 | 4910 | 4,910' | 330' | 1.42 | Custer | Hayward |
| 137 | Parker Peak | 4,848' | 683' | 13.87 | Fall River | Minnekahta |
| 138 | Pilger Mountain | 4,795' | 525' | 8.16 | Custer | Burdock |
| 139 | 4790 | 4,790' | 320' | 1.82 | Meade | Deadman Mountain |
| 140 | Matias Peak | 4,785' | 620' | 2.50 | Fall River | Minnekahta |
| 141 | 4770 | 4,770' | 460' | 1.26 | Meade | Tilford |
| 142 | 4770 | 4,770' | 300' | 3.02 | Pennington | Rockerville |
| 143 | 4741 | 4,741' | 351' | 2.05 | Meade | Tilford |
| 144 | Buzzards Roost | 4,695' | 378' | 2.76 | Pennington | Pactola Dam |
| 145 | Wheaton, Mount | 4,610' | 340' | 1.14 | Pennington | Pactola Dam |
| 146 | Lone Tree Hill | 4,610' | 300' | 4.49 | Crook | Alva |
| 147 | Commissary Point | 4,598' | 348' | 1.37 | Pennington | Pactola Dam |
| 148 | 4516 | 4,516' | 306' | 1.84 | Pennington | Rapid City West |
| 149 | 4485 | 4,485' | 380' | 1.93 | Fall River | Edgemont NE |
| 150 | 4440 | 4,440' | 390' | 3.69 | Custer | Jewel Cave SW |
| 151 | 4405 | 4,405' | 340' | 2.73 | Fall River | Edgemont NE |
| 152 | Flagpole Mountain | 4,325' | 570' | 4.87 | Fall River | Cascade Springs |
| 153 | 4210 | 4,210' | 339' | 0.89 | Fall River | Angostura Reservoir |