| # | Name | Rank | Elevation | Prominence | Counties | Quadrangle |
| 1 | Black Elk Peak | 1 | 7,242' | 2,932' | Pennington | Custer |
| 2 | Odakota Mountain | 2 | 7,199' | 1,327' | Pennington | Ditch Creek |
| 3 | Bear Mountain | 3 | 7,168' | 457' | Pennington | Berne |
| 4 | Terry Peak | 5 | 7,070' | 1,012' | Lawrence | Lead |
| 5 | "Sylvan Peak" | 6 | 7,001' | 769' | Custer | Custer |
| 6 | Custer Peak | 14 | 6,804' | 654' | Lawrence | Minnesota Ridge |
| 7 | Hat Mountain | 15 | 6,779' | 369' | Pennington | Ditch Creek |
| 8 | Zimmer Ridge | 20 | 6,620' | 685' | Pennington | Medicine Mountain |
| 9 | Saint Elmo Peak | 24 | 6,458' | 758' | Pennington | Custer |
| 10 | Atlantic Hill | 26 | 6,393' | 373' | Custer | Berne |
| 11 | 6361 | 29 | 6,361' | 421' | Custer | Berne |
| 12 | Castle Peak | 30 | 6,358' | 448' | Pennington | Rochford |
| 13 | 6260 | 33 | 6,260' | 800' | Custer | Cicero Peak |
| 14 | 6260 | 34 | 6,260' | 320' | Pennington | Rochford |
| 15 | Cicero Peak | 43 | 6,166' | 503' | Custer | Cicero Peak |
| 16 | 6070 | 47 | 6,070' | 570' | Pennington | Silver City |
| 17 | Coolidge, Mount | 54 | 6,023' | 683' | Custer | Mount Coolidge |
| 18 | Scruton Mountain | 60 | 5,922' | 342' | Pennington | Silver City |
| 19 | "Mount Warner" | 66 | 5,889' | 949' | Pennington | Mount Rushmore |
| 20 | Samelias Peak | 71 | 5,856' | 476' | Pennington | Mount Rushmore |
| 21 | 5778 | 80 | 5,778' | 398' | Custer | Custer |
| 22 | Crow Peak | 81 | 5,771' | 911' | Lawrence | Maurice |
| 23 | 5741 | 82 | 5,741' | 361' | Pennington | Mount Rushmore |
| 24 | Theodore Roosevelt, Mount | 89 | 5,700' | 360' | Lawrence | Spearfish |
| 25 | Elk Mountains (HP) | 93 | 5,669' | 839' | Custer | Clifton |
| 26 | 5460 | 110 | 5,460' | 400' | Custer | Iron Mountain |
| 27 | Silver Mountain | 118 | 5,405' | 425' | Pennington | Mount Rushmore |
| 28 | "Veteran's Peak" | 124 | 5,333' | 343' | Meade | Deadman Mountain |
| 29 | Boulder Hill | 125 | 5,331' | 391' | Pennington | Mount Rushmore |
| 30 | 5316 | 128 | 5,316' | 466' | Custer | Pringle |
| 31 | 5250 | 133 | 5,250' | 320' | Custer | Pringle |
| 32 | 5048 | 148 | 5,048' | 348' | Pennington | Mount Rushmore |
| 33 | 5017 | 149 | 5,017' | 347' | Custer | Pringle |
| 34 | Rankin Ridge | 150 | 5,013' | 403' | Custer | Mount Coolidge |
| 35 | 5000 | 151 | 5,000' | 420' | Pennington | Mount Rushmore |
| 36 | 4990 | 154 | 4,990' | 300' | Custer | Pringle |
| 37 | Deadman Mountain | 157 | 4,943' | 333' | Meade | Deadman Mountain |
| 38 | Parker Peak | 160 | 4,848' | 683' | Fall River | Minnekahta |
| 39 | Elkhorn Peak | 170 | 4,540' | 560' | Lawrence | Deadwood North |
| 40 | Lookout Peak | 174 | 4,478' | 578' | Lawrence | Spearfish |
| 41 | Bear Butte | 178 | 4,426' | 1,251' | Meade | Fort Meade |
| 42 | 4340 | 185 | 4,340' | 480' | Lawrence | Spearfish |